STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO55436.1CRISPR-associated protein, Cas5e family. (244 aa)    
Predicted Functional Partners:
SEO55452.1
CRISPR-associated protein, Cse4 family.
 
 
 0.999
SEO55471.1
CRISPR-associated protein, Cse1 family.
  
 
 0.990
SEO55497.1
CRISPR-associated helicase, Cas3 family.
 
 
 0.988
cas1
CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.964
SEO87883.1
CRISPR-associated endonuclease/helicase Cas3.
  
 
 0.947
SEO55414.1
CRISPR-associated protein, Cse3 family.
  
  
 0.901
SEO55372.1
CRISPR-associated protein, Cas2 family.
       0.799
SEP11674.1
Fe(3+) dicitrate transport protein.
  
     0.527
SEO56596.1
HEAT repeat-containing protein.
  
     0.424
Your Current Organism:
Aquisalimonas asiatica
NCBI taxonomy Id: 406100
Other names: A. asiatica, Aquisalimonas asiatica Marquez et al. 2007, CCM 7368, CECT 7151, CGMCC 1.6291, DSM 18102, strain CG12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.