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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO66039.1Polysaccharide deacetylase. (294 aa)    
Predicted Functional Partners:
SEO66002.1
GTPase, G3E family.
 
     0.765
SEO66055.1
N-carbamoyl-L-amino-acid hydrolase.
    
  0.724
SEO66075.1
Predicted amidohydrolase.
 
    0.714
SEO44553.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
  
 
 0.712
SEO66021.1
Hypothetical protein.
       0.630
SEO66109.1
N-methylhydantoinase A.
 
     0.620
SEO66091.1
N-methylhydantoinase B.
 
     0.605
SEO90768.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.536
SEO65984.1
tRNA(Arg) A34 adenosine deaminase TadA.
 
     0.484
SEO66127.1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
     
 0.451
Your Current Organism:
Aquisalimonas asiatica
NCBI taxonomy Id: 406100
Other names: A. asiatica, Aquisalimonas asiatica Marquez et al. 2007, CCM 7368, CECT 7151, CGMCC 1.6291, DSM 18102, strain CG12
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