STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO78975.1Iron-regulated ABC transporter membrane component SufB. (489 aa)    
Predicted Functional Partners:
SEO78943.1
Iron-regulated ABC transporter permease protein SufD.
 
0.999
SEO78957.1
Iron-regulated ABC transporter ATPase subunit SufC.
 
 0.999
SEO78925.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.997
SEO43019.1
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
  
 
 0.932
SEO78912.1
Nitrogen fixation protein NifU.
 
  
 0.914
SEO79011.1
Transcriptional regulator, BadM/Rrf2 family.
 
   
 0.869
SEO52351.1
Selenocysteine lyase/Cysteine desulfurase.
 
 
 0.858
SEP09883.1
Probable FeS assembly SUF system protein SufT.
 
   
 0.832
SEP09174.1
Cysteine desulfuration protein SufE.
 
 
 0.832
SEO60336.1
Cysteine desulfuration protein SufE.
 
 
 0.799
Your Current Organism:
Aquisalimonas asiatica
NCBI taxonomy Id: 406100
Other names: A. asiatica, Aquisalimonas asiatica Marquez et al. 2007, CCM 7368, CECT 7151, CGMCC 1.6291, DSM 18102, strain CG12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.