STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO82826.1Uncharacterized conserved protein. (120 aa)    
Predicted Functional Partners:
SEO82812.1
Uncharacterized conserved protein.
 
   
0.846
SEO82845.1
Uncharacterized conserved protein YbaA, DUF1428 family.
 
     0.822
SEO70907.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.801
SEO47487.1
Uncharacterized conserved protein.
  
     0.775
SEO82754.1
Carbon-monoxide dehydrogenase large subunit.
  
    0.500
SEO82791.1
Carbon-monoxide dehydrogenase medium subunit.
       0.496
SEO82771.1
Carbon-monoxide dehydrogenase small subunit.
       0.490
Your Current Organism:
Aquisalimonas asiatica
NCBI taxonomy Id: 406100
Other names: A. asiatica, Aquisalimonas asiatica Marquez et al. 2007, CCM 7368, CECT 7151, CGMCC 1.6291, DSM 18102, strain CG12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.