STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO79697.1Formamidase. (409 aa)    
Predicted Functional Partners:
SEP00692.1
L-glutamine synthetase.
     
 0.773
SEO71687.1
Gamma-glutamylmethylamide synthetase; Belongs to the glutamine synthetase family.
     
 0.763
amiF
Formamidase; Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide; Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family.
 
  
 0.753
amiE
Amidase; Also exhibits in vitro acyl transferase activity, transferring the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates.
 
  
 0.677
SEO79649.1
Urea transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.599
SEO79614.1
Urea transport system ATP-binding protein.
 
     0.593
SEO89793.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.564
SEO73645.1
Putative Mg2+ transporter-C (MgtC) family protein.
   
    0.499
SEO66620.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
    
 0.494
SEP17109.1
Nitrile hydratase; NHase catalyzes the hydration of various nitrile compounds to the corresponding amides; Belongs to the nitrile hydratase subunit beta family.
  
  
  0.479
Your Current Organism:
Aquisalimonas asiatica
NCBI taxonomy Id: 406100
Other names: A. asiatica, Aquisalimonas asiatica Marquez et al. 2007, CCM 7368, CECT 7151, CGMCC 1.6291, DSM 18102, strain CG12
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