STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP00004.1Uncharacterized conserved protein, Alpha-E superfamily. (316 aa)    
Predicted Functional Partners:
SEO99988.1
Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily.
  
 0.991
SEP00031.1
Transglutaminase-like enzyme, putative cysteine protease.
  
 0.991
SEP00016.1
Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily.
 
  
0.880
SEP03830.1
Transglutaminase-like enzyme, putative cysteine protease.
 
  
 0.821
SEP07114.1
Putative proteasome-type protease.
 
    0.799
SEP00048.1
D-alanine-D-alanine ligase.
       0.576
SEP07145.1
Hypothetical protein.
 
     0.557
SEO84539.1
Hypothetical protein.
  
  
 0.549
SEO99981.1
fatty-acyl-CoA synthase.
       0.486
Your Current Organism:
Aquisalimonas asiatica
NCBI taxonomy Id: 406100
Other names: A. asiatica, Aquisalimonas asiatica Marquez et al. 2007, CCM 7368, CECT 7151, CGMCC 1.6291, DSM 18102, strain CG12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.