STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP03066.1Type VI secretion system protein VasD. (184 aa)    
Predicted Functional Partners:
SEP03087.1
Type VI secretion system protein ImpK.
 
  
 0.980
SEP03073.1
Type VI secretion system protein ImpJ.
 
  
 0.974
SEP03131.1
Type VI secretion system protein ImpB.
 
  
 0.958
SEP03093.1
Type VI secretion system protein ImpL.
 
  
 0.955
SEP03148.1
Type VI secretion system protein ImpC.
 
  
 0.939
SEP03123.1
Type VI secretion system protein VasJ.
 
  
 0.933
SEP03190.1
Type VI secretion system protein ImpG.
 
  
 0.919
SEP03163.1
Type VI secretion system secreted protein Hcp.
 
  
 0.905
SEP03201.1
Type VI secretion system protein ImpH.
 
  
 0.902
SEO75594.1
Type VI secretion system secreted protein VgrG.
 
  
 0.839
Your Current Organism:
Aquisalimonas asiatica
NCBI taxonomy Id: 406100
Other names: A. asiatica, Aquisalimonas asiatica Marquez et al. 2007, CCM 7368, CECT 7151, CGMCC 1.6291, DSM 18102, strain CG12
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