STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP08513.1Transcriptional regulator, HxlR family. (152 aa)    
Predicted Functional Partners:
SEP08531.1
2,4-dienoyl-CoA reductase.
 
   
 0.612
SEP18682.1
Hypothetical protein.
 
  
 0.577
SEO68676.1
Transcriptional regulator, TetR family.
  
   
 0.465
SEO58721.1
Hypothetical protein.
  
     0.456
SEP08560.1
Protein of unknown function.
       0.449
SEO82812.1
Uncharacterized conserved protein.
 
    0.432
SEO49717.1
Hypothetical protein.
  
     0.419
Your Current Organism:
Aquisalimonas asiatica
NCBI taxonomy Id: 406100
Other names: A. asiatica, Aquisalimonas asiatica Marquez et al. 2007, CCM 7368, CECT 7151, CGMCC 1.6291, DSM 18102, strain CG12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.