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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP11647.1Two component transcriptional regulator, LuxR family. (216 aa)    
Predicted Functional Partners:
SEO51985.1
Two-component system, NarL family, sensor histidine kinase BarA.
 
 
 0.992
SEO80628.1
PAS domain S-box-containing protein.
 
 
 0.991
SEP11661.1
Signal transduction histidine kinase, glucose-6-phosphate specific.
 
 0.986
SEO56801.1
Hpt sensor hybrid histidine kinase.
 0.984
SEO88935.1
PAS domain S-box-containing protein.
 
 
 0.920
SEO52333.1
His Kinase A (phospho-acceptor) domain-containing protein.
 0.845
SEO80001.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.832
SEP11162.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.832
SEO56469.1
PAS domain S-box-containing protein.
 
 
 0.819
SEO52300.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
     0.772
Your Current Organism:
Aquisalimonas asiatica
NCBI taxonomy Id: 406100
Other names: A. asiatica, Aquisalimonas asiatica Marquez et al. 2007, CCM 7368, CECT 7151, CGMCC 1.6291, DSM 18102, strain CG12
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