STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP13338.1Membrane protein required for beta-lactamase induction. (291 aa)    
Predicted Functional Partners:
SEP13348.1
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD.
  
  
 0.815
SEP01335.1
Uroporphyrin-3 C-methyltransferase.
  
     0.605
SEO88740.1
Sporulation related domain-containing protein.
  
     0.553
SEP01349.1
HemY protein.
  
     0.552
SEO75370.1
TIGR02099 family protein.
  
     0.512
SEO67349.1
Hypothetical protein.
  
     0.510
SEP13368.1
Hypothetical protein.
       0.501
SEP13424.1
Protein of unknown function.
  
     0.425
SEP14891.1
Uncharacterized conserved protein, contains Zn-finger domain.
  
     0.406
nudJ
ADP-ribose pyrophosphatase YjhB, NUDIX family; Belongs to the Nudix hydrolase family. NudJ subfamily.
  
     0.402
Your Current Organism:
Aquisalimonas asiatica
NCBI taxonomy Id: 406100
Other names: A. asiatica, Aquisalimonas asiatica Marquez et al. 2007, CCM 7368, CECT 7151, CGMCC 1.6291, DSM 18102, strain CG12
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