STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP16101.1General secretion pathway protein C. (305 aa)    
Predicted Functional Partners:
SEP16114.1
General secretion pathway protein D.
 
 
 0.999
SEO52069.1
Hypothetical protein.
  
 
 0.965
SEP16172.1
General secretion pathway protein I.
 
  
 0.942
SEP16177.1
General secretion pathway protein J.
 
  
 0.931
SEP16201.1
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.913
SEP16190.1
General secretion pathway protein K.
 
  
 0.911
SEP16158.1
General secretion pathway protein H.
 
  
 0.907
SEP16209.1
General secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.906
SEP16129.1
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.897
SEP16149.1
General secretion pathway protein G.
 
  
 0.870
Your Current Organism:
Aquisalimonas asiatica
NCBI taxonomy Id: 406100
Other names: A. asiatica, Aquisalimonas asiatica Marquez et al. 2007, CCM 7368, CECT 7151, CGMCC 1.6291, DSM 18102, strain CG12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.