STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABR55582.1PFAM: Protein of unknown function DUF432; KEGG: mmp:MMP0535 hypothetical protein. (212 aa)    
Predicted Functional Partners:
ABR55581.1
PFAM: MscS Mechanosensitive ion channel; KEGG: mmp:MMP0534 hypothetical protein.
       0.796
ABR55477.1
PFAM: sodium/hydrogen exchanger; KEGG: mmp:MMP0707 Na+/H+ exchanger.
      
 0.689
ABR54347.1
PFAM: Transketolase domain protein; KEGG: mmp:MMP1115 transketolase, N terminal half.
     
 0.622
ABR55111.1
Geranylgeranylglyceryl phosphate synthase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
      
 0.622
ABR54894.1
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: mmp:MMP1689 sulfopyruvate decarboxylase subunit beta.
      
 0.619
ABR55583.1
DNA-(apurinic or apyrimidinic site) lyase; PFAM: helix-hairpin-helix motif; protein of unknown function DUF123; HhH-GPD family protein; SMART: Excinuclease ABC C subunit domain protein; KEGG: mmp:MMP0537 endonuclease III homologue.
       0.537
Your Current Organism:
Methanococcus vannielii
NCBI taxonomy Id: 406327
Other names: M. vannielii SB, Methanococcus vannielii SB, Methanococcus vannielii str. SB, Methanococcus vannielii strain SB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.