Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DK26_08095Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (177 aa)    
Predicted Functional Partners:
DK26_08100
DNA topoisomerase IV subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.657
DK26_08115
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.656
DK26_08105
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.651
DK26_08110
Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.651
DK26_08090
CreA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.522
DK26_08120
2-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.438
Your Current Organism:
Bosea sp. WAO
NCBI taxonomy Id: 406341
Other names: B. sp. WAO
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