Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DK26_19740GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)    
Predicted Functional Partners:
DK26_19745
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.757
DK26_20945
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.756
DK26_08675
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.711
DK26_22590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.708
DK26_23225
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.705
DK26_12775
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.687
DK26_21245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.666
DK26_21355
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.662
DK26_03660
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.658
DK26_13860
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.654
Your Current Organism:
Bosea sp. WAO
NCBI taxonomy Id: 406341
Other names: B. sp. WAO
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