Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
NJ7G_0366 | NJ7G_0793 | Ammonium transporter; Belongs to the P(II) protein family. | TetR family transcriptional regulator. | 0.579 |
NJ7G_0366 | NJ7G_0795 | Ammonium transporter; Belongs to the P(II) protein family. | Sodium/hydrogen exchanger. | 0.684 |
NJ7G_0366 | NJ7G_1441 | Ammonium transporter; Belongs to the P(II) protein family. | PAS sensor protein. | 0.605 |
NJ7G_0792 | NJ7G_0793 | Hypothetical protein. | TetR family transcriptional regulator. | 0.460 |
NJ7G_0792 | NJ7G_0794 | Hypothetical protein. | MATE efflux family protein. | 0.528 |
NJ7G_0792 | NJ7G_0796 | Hypothetical protein. | Hypothetical protein. | 0.406 |
NJ7G_0793 | NJ7G_0366 | TetR family transcriptional regulator. | Ammonium transporter; Belongs to the P(II) protein family. | 0.579 |
NJ7G_0793 | NJ7G_0792 | TetR family transcriptional regulator. | Hypothetical protein. | 0.460 |
NJ7G_0793 | NJ7G_0794 | TetR family transcriptional regulator. | MATE efflux family protein. | 0.828 |
NJ7G_0793 | NJ7G_0795 | TetR family transcriptional regulator. | Sodium/hydrogen exchanger. | 0.507 |
NJ7G_0793 | NJ7G_0796 | TetR family transcriptional regulator. | Hypothetical protein. | 0.460 |
NJ7G_0793 | NJ7G_1441 | TetR family transcriptional regulator. | PAS sensor protein. | 0.548 |
NJ7G_0793 | NJ7G_2131 | TetR family transcriptional regulator. | PP-loop domain protein. | 0.439 |
NJ7G_0793 | NJ7G_2196 | TetR family transcriptional regulator. | Lycopene beta and epsilon cyclase. | 0.403 |
NJ7G_0794 | NJ7G_0792 | MATE efflux family protein. | Hypothetical protein. | 0.528 |
NJ7G_0794 | NJ7G_0793 | MATE efflux family protein. | TetR family transcriptional regulator. | 0.828 |
NJ7G_0794 | NJ7G_0795 | MATE efflux family protein. | Sodium/hydrogen exchanger. | 0.603 |
NJ7G_0794 | NJ7G_0796 | MATE efflux family protein. | Hypothetical protein. | 0.478 |
NJ7G_0795 | NJ7G_0366 | Sodium/hydrogen exchanger. | Ammonium transporter; Belongs to the P(II) protein family. | 0.684 |
NJ7G_0795 | NJ7G_0793 | Sodium/hydrogen exchanger. | TetR family transcriptional regulator. | 0.507 |
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