STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NJ7G_0806Helix-turn-helix domain protein. (236 aa)    
Predicted Functional Partners:
NJ7G_2316
Hypothetical protein.
 
    0.971
NJ7G_0783
Hypothetical protein.
 
    0.970
NJ7G_2772
Hypothetical protein.
 
     0.727
NJ7G_4098
Hypothetical protein.
 
     0.725
NJ7G_2774
Radical SAM domain protein.
  
     0.691
NJ7G_1135
Hydroxymethylglutaryl-CoA synthase.
  
    0.679
NJ7G_3957
tRNA-guanine transglycosylase.
  
     0.652
NJ7G_1132
TatD-related deoxyribonuclease.
  
     0.649
carS
Hypothetical protein; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
  
     0.649
ribK
CTP-dependent riboflavin kinase; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family.
 
     0.632
Your Current Organism:
Natrinema sp. J72
NCBI taxonomy Id: 406552
Other names: N. sp. J7-2, Natrinema sp. J7-2
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