STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl44eRibosomal protein L44E; Binds to the 23S rRNA. (93 aa)    
Predicted Functional Partners:
rpl31e
Ribosomal protein L31e; Belongs to the ribosomal protein L31e family.
  
 0.999
rpl40e
Ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
  
 0.999
rpl19e
Ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 0.999
rpl23
Ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.
  
 0.999
rpl18e
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL18 family.
  
 0.998
rpl24e
50S ribosomal protein L24E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL24 family.
  
 0.998
rpl21e
Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
 
 0.998
rpl32e
Ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family.
  
 0.998
rpl24
Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit.
   
 0.998
rpl37ae
Ribosomal L37ae protein; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family.
  
 0.998
Your Current Organism:
Natrinema sp. J72
NCBI taxonomy Id: 406552
Other names: N. sp. J7-2, Natrinema sp. J7-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.