STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XNC1_0675Putative membrane protein (fragment). (32 aa)    
Predicted Functional Partners:
XNC1_0676
Putative membrane protein (fragment).
       0.559
livH
High-affinity branched-chain amino acid transport protein (ABC superfamily, membrane); Belongs to the binding-protein-dependent transport system permease family.
       0.486
livM
High-affinity branched-chain amino acid transport protein (ABC superfamily, membrane); Belongs to the binding-protein-dependent transport system permease family.
       0.486
livG
High-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind).
       0.486
livF
High-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind); Belongs to the ABC transporter superfamily.
       0.486
Your Current Organism:
Xenorhabdus nematophila
NCBI taxonomy Id: 406817
Other names: X. nematophila ATCC 19061, Xenorhabdus nematophila ATCC 19061, Xenorhabdus nematophila str. ATCC 19061, Xenorhabdus nematophila strain ATCC 19061
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.