STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XNC1_0913Conserved hypothetical protein. (115 aa)    
Predicted Functional Partners:
secM
Secretion monitor, regulator of secA translation (General Secretory Pathway); Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.774
XNC1_3121
Conserved hypothetical protein.
  
     0.774
XNC1_4506
Similar to putative lipoprotein YidQ of Escherichia coli; Doubtful CDS; putative factor.
  
     0.774
XNC1_0209
Conserved hypothetical protein.
  
     0.773
yrfF
Putative membrane protein.
  
     0.773
XNC1_1654
Uncharacterized protein; Gene remnant; putative regulator.
  
     0.772
XNC1_2308
Conserved hypothetical protein; Belongs to the UPF0482 family.
  
     0.772
rcsF
Regulator in colanic acid synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.772
XNC1_2135
Conserved hypothetical protein.
  
     0.771
XNC1_0660
Conserved hypothetical protein.
  
     0.770
Your Current Organism:
Xenorhabdus nematophila
NCBI taxonomy Id: 406817
Other names: X. nematophila ATCC 19061, Xenorhabdus nematophila ATCC 19061, Xenorhabdus nematophila str. ATCC 19061, Xenorhabdus nematophila strain ATCC 19061
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.