STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RtxDRTX toxin ABC transporter protein RtxD; Function of strongly homologous gene; transporter. (475 aa)    
Predicted Functional Partners:
XNC1_1376
ABC transporter RTX toxin; Function of strongly homologous gene; enzyme.
 
 0.975
XNC1_1378
RTX toxin ABC transporter; Function of strongly homologous gene; enzyme.
 
 0.973
XNC1_4505
Colicin V secretion/processing ATP-binding protein cvaB; Function of strongly homologous gene; enzyme.
 
 0.743
XNC1_3823
Transposase (fragment); Gene remnant; enzyme.
 
 0.705
tolC
Outer membrane channel; tolerance to colicin E1, segregation of daughter chromosomes, role in organic solvent tolerance.
  
 
 0.686
XNC1_3820
Colicin V secretion/processing ATP-binding protein cvaB (fragment).
 
 
 0.663
XNC1_4023
Alkaline protease secretion ATP-binding protein aprD.
  
 0.651
XNC1_1367
Complete genome; segment 14/17.
 
  
 0.641
XNC1_4021
Alkaline protease secretion protein aprF.
 
 
 0.605
XNC1_1372
Alkaline protease secretion protein (fragment); Gene remnant; enzyme.
  
 
 0.540
Your Current Organism:
Xenorhabdus nematophila
NCBI taxonomy Id: 406817
Other names: X. nematophila ATCC 19061, Xenorhabdus nematophila ATCC 19061, Xenorhabdus nematophila str. ATCC 19061, Xenorhabdus nematophila strain ATCC 19061
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