STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhSPutative transport protein (ABC superfamily, membrane). (386 aa)    
Predicted Functional Partners:
ybhF
Putative transport protein (ABC superfamily, atp_bind).
  
 0.997
ybhG
Putative multidrug resistance membrane protein.
 
  
 0.958
yadG
Putative transport protein (ABC superfamily, atp_bind).
 
  
 0.936
yhbG
Putative transport protein (ABC superfamily, atp_bind).
   
  0.905
ybhR
Putative transport protein (ABC superfamily, membrane).
 
  
 
0.888
XNC1_0608
ABC transporter related.
      0.887
livG
High-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind).
 
      0.873
potA
Spermidine/putrescine transport protein (ABC superfamily, atp_bind); Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
   
  0.752
ybiH
Putative transcriptional repressor with homeodomain-like DNA binding domain (TetR/AcrR family).
 
    0.748
metN
D-and L-methionine transport protein (ABC superfamily, atp_bind); Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
      0.662
Your Current Organism:
Xenorhabdus nematophila
NCBI taxonomy Id: 406817
Other names: X. nematophila ATCC 19061, Xenorhabdus nematophila ATCC 19061, Xenorhabdus nematophila str. ATCC 19061, Xenorhabdus nematophila strain ATCC 19061
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