STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XNC1_2159Putative 2-dehydropantoate 2-reductase. (334 aa)    
Predicted Functional Partners:
XNC1_2157
Phenylalanine racemase (ATP-hydrolyzing)(polyketide synthase); Function of strongly homologous gene; enzyme.
       0.774
XNC1_2156
Long-chain-fatty-acid--CoA ligase (polyketide synthase); Function of strongly homologous gene; enzyme.
       0.773
XNC1_2158
Hypothetical protein; putative membrane protein.
       0.773
XNC1_2160
Hypothetical protein.
       0.773
XNC1_2161
Putative Phenylalanine racemase (ATP-hydrolyzing).
       0.773
XNC1_2155
Putative Clavaminate synthase.
       0.631
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
    
 0.604
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
    
 0.604
XNC1_2154
Aminotransferase, class I and II precursor.
       0.566
XNC1_2153
Arginine aminomutase.
       0.490
Your Current Organism:
Xenorhabdus nematophila
NCBI taxonomy Id: 406817
Other names: X. nematophila ATCC 19061, Xenorhabdus nematophila ATCC 19061, Xenorhabdus nematophila str. ATCC 19061, Xenorhabdus nematophila strain ATCC 19061
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