STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydgJScyllo-inositol 2-dehydrogenase (NADP+); Putative NAD(P)-binding dehydrogenase, with glyceraldehyde-3-P dehydrogenase-like and NAD(P)-binding domains. (356 aa)    
Predicted Functional Partners:
XNC1_2980
Rhizopine catabolism protein mocC.
 
 
 0.974
XNC1_2983
Inositol 2-dehydrogenase.
  
 
  0.934
XNC1_2979
Protein iolB.
 
  
 0.751
XNC1_2984
Putative malonic semialdehyde oxidative decarboxylase; Belongs to the TPP enzyme family.
 
  
 0.749
yfeH
Putative membrane protein.
  
    0.666
XNC1_4356
Hypothetical protein.
  
     0.624
cobB
Putative enzyme with DHS-like NAD/FAD-binding domain; Belongs to the sirtuin family. Class III subfamily.
    
   0.617
XNC1_2981
Putative Fructokinase.
 
  
 0.583
lysS
Lysine tRNA synthetase, constitutive; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.533
ydgK
Putative oxidoreductase.
       0.526
Your Current Organism:
Xenorhabdus nematophila
NCBI taxonomy Id: 406817
Other names: X. nematophila ATCC 19061, Xenorhabdus nematophila ATCC 19061, Xenorhabdus nematophila str. ATCC 19061, Xenorhabdus nematophila strain ATCC 19061
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