STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XNC1_3086Hypothetical protein. (231 aa)    
Predicted Functional Partners:
XNC1_3090
Replication gene A protein (GpA).
 
  
 0.976
XNC1_3078
Head completion/stabilization protein (GpL).
 
    0.947
XNC1_3079
Terminase, endonuclease subunit (GpM).
 
    0.947
XNC1_3071
Tail completion protein R (GpR).
 
    0.945
XNC1_3070
Putative phage tail protein S.
 
    0.935
XNC1_0188
Hypothetical protein.
 
    0.927
XNC1_2393
Presumed portal vertex protein (GpQ) (fragment).
 
    0.927
XNC1_3080
Major capsid protein precursor (GpN).
 
    0.927
XNC1_3081
Presumed capsid scaffolding protein (GpO).
 
    0.927
XNC1_3083
Fels-2 prophage protein.
 
    0.927
Your Current Organism:
Xenorhabdus nematophila
NCBI taxonomy Id: 406817
Other names: X. nematophila ATCC 19061, Xenorhabdus nematophila ATCC 19061, Xenorhabdus nematophila str. ATCC 19061, Xenorhabdus nematophila strain ATCC 19061
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.