STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XNC1_4143Conserved hypothetical protein. (311 aa)    
Predicted Functional Partners:
XNC1_2656
Putative membrane protein.
  
     0.668
ampE
Putative transmembrane protein, protease.
  
     0.598
XNC1_2630
Putative oligipeptide transport protein (ABC superfamily, peri_bind) (fragment).
  
     0.551
matP
Conserved hypothetical protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.
  
     0.494
XNC1_4142
Hypothetical protein.
       0.486
yejM
Putative phosphatase/sulphatase.
  
     0.484
fhuF
Ferric hydroxamate transport protein; Function of strongly homologous gene; transporter.
  
     0.437
yejK
Nucleotide associated protein, present in spermidine nucleoids.
  
     0.411
Your Current Organism:
Xenorhabdus nematophila
NCBI taxonomy Id: 406817
Other names: X. nematophila ATCC 19061, Xenorhabdus nematophila ATCC 19061, Xenorhabdus nematophila str. ATCC 19061, Xenorhabdus nematophila strain ATCC 19061
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.