Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
XBJ1_0500 | XBJ1_0501 | XBJ1_0500 | XBJ1_0501 | Hypothetical protein. | Hypothetical protein. | 0.441 |
XBJ1_0501 | XBJ1_0500 | XBJ1_0501 | XBJ1_0500 | Hypothetical protein. | Hypothetical protein. | 0.441 |
XBJ1_0501 | XBJ1_0503 | XBJ1_0501 | XBJ1_0503 | Hypothetical protein. | Conserved hypothetical protein. | 0.409 |
XBJ1_0501 | udp | XBJ1_0501 | XBJ1_0502 | Hypothetical protein. | Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the PNP/UDP phosphorylase family. | 0.623 |
XBJ1_0503 | XBJ1_0501 | XBJ1_0503 | XBJ1_0501 | Conserved hypothetical protein. | Hypothetical protein. | 0.409 |
XBJ1_0503 | udp | XBJ1_0503 | XBJ1_0502 | Conserved hypothetical protein. | Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the PNP/UDP phosphorylase family. | 0.522 |
udp | XBJ1_0501 | XBJ1_0502 | XBJ1_0501 | Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the PNP/UDP phosphorylase family. | Hypothetical protein. | 0.623 |
udp | XBJ1_0503 | XBJ1_0502 | XBJ1_0503 | Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the PNP/UDP phosphorylase family. | Conserved hypothetical protein. | 0.522 |