STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfaZPutative outer membrane porin protein. (180 aa)    
Predicted Functional Partners:
XBJ1_2325
Conserved hypothetical protein; Belongs to the UPF0482 family.
  
     0.764
XBJ1_1899
Conserved hypothetical protein.
  
     0.756
XBJ1_1619
Conserved hypothetical protein.
  
     0.748
secM
Secretion monitor, regulator of secA translation (General Secretory Pathway); Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.730
fliT
Putative flagellar biosynthesis; export chaperone for FliD.
  
     0.714
flgN
Flagellar biosynthesis; believed to be export chaperone for FlgK and FlgL.
  
     0.707
flgM
anti-FliA (anti-sigma) factor; also known as RflB protein.
  
     0.700
yrfF
Putative membrane protein.
  
     0.695
XBJ1_0239
Conserved hypothetical protein.
  
     0.695
tus
Replication termination protein.
  
     0.686
Your Current Organism:
Xenorhabdus bovienii
NCBI taxonomy Id: 406818
Other names: X. bovienii SS-2004, Xenorhabdus bovienii SS-2004, Xenorhabdus bovienii str. SS-2004, Xenorhabdus bovienii strain SS-2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.