Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XBJ1_1663Major facilitator family transporter. (408 aa)    
Predicted Functional Partners:
XBJ1_1661
Conserved hypothetical protein.
 
     0.870
XBJ1_1662
Conserved hypothetical protein.
       0.820
XBJ1_1852
Hypothetical protein.
  
     0.759
XBJ1_1851
Hypothetical protein.
  
     0.749
XBJ1_0617
Conserved hypothetical protein.
  
     0.620
XBJ1_1534
Hypothetical protein; No homology to any previously reported sequences.
  
     0.586
XBJ1_1660
Arginine aminomutase, putative (fragment).
       0.576
dxs
1-deoxy-D-xylulose 5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.527
xnp2
Putative Nematicidal protein 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
     0.520
XBJ1_1850
Hypothetical protein.
  
     0.479
Your Current Organism:
Xenorhabdus bovienii
NCBI taxonomy Id: 406818
Other names: X. bovienii SS-2004, Xenorhabdus bovienii SS-2004, Xenorhabdus bovienii str. SS-2004, Xenorhabdus bovienii strain SS-2004
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