STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XBJ1_2160Putative methyltransferase. (259 aa)    
Predicted Functional Partners:
XBJ1_2161
Putative Muramoyltetrapeptide carboxypeptidase.
 
     0.551
XBJ1_0775
Putative Ornithine racemase.
     
 0.498
XBJ1_2152
Peptide synthetase XpsB.
     
 0.498
XBJ1_2159
Putative Asparagine--tRNA ligase.
       0.486
gloA
Glyoxalase I, nickel isomerase.
 
     0.408
XBJ1_0507
Conserved hypothetical protein.
  
  
 0.407
Your Current Organism:
Xenorhabdus bovienii
NCBI taxonomy Id: 406818
Other names: X. bovienii SS-2004, Xenorhabdus bovienii SS-2004, Xenorhabdus bovienii str. SS-2004, Xenorhabdus bovienii strain SS-2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.