STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XBJ1_2601Conserved hypothetical protein. (106 aa)    
Predicted Functional Partners:
XBJ1_3736
Transposase.
  
     0.774
XBJ1_3747
Transposase.
  
     0.774
XBJ1_0151
Transposase.
  
     0.773
XBJ1_1328
Transposase (fragment).
  
     0.766
XBJ1_4124
Transposase (fragment).
  
     0.766
XBJ1_1892
Transposase (fragment).
  
     0.760
XBJ1_0458
Transposase (fragment).
  
     0.683
ypfI
Putative acyl-CoA N-acyltransferase with nucleoside triphosphate hydrolase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
       0.528
yeaL
Putative membrane protein.
       0.528
XBJ1_2600
Hypothetical protein; putative exported protein.
       0.528
Your Current Organism:
Xenorhabdus bovienii
NCBI taxonomy Id: 406818
Other names: X. bovienii SS-2004, Xenorhabdus bovienii SS-2004, Xenorhabdus bovienii str. SS-2004, Xenorhabdus bovienii strain SS-2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.