Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
XBJ1_0310 | XBJ1_0408 | XBJ1_0310 | XBJ1_0408 | Putative non-ribosomal peptide synthetase. | Putative o-succinylbenzoate--CoA ligase. | 0.717 |
XBJ1_0310 | XBJ1_2699 | XBJ1_0310 | XBJ1_2699 | Putative non-ribosomal peptide synthetase. | Acyl-CoA dehydrogenase. | 0.540 |
XBJ1_0310 | XBJ1_3489 | XBJ1_0310 | XBJ1_3489 | Putative non-ribosomal peptide synthetase. | Putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (LACS). | 0.556 |
XBJ1_0310 | fadD | XBJ1_0310 | XBJ1_2242 | Putative non-ribosomal peptide synthetase. | acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase). | 0.663 |
XBJ1_0310 | fadE | XBJ1_0310 | XBJ1_1749 | Putative non-ribosomal peptide synthetase. | Acyl coenzyme A dehydrogenase. | 0.540 |
XBJ1_0310 | fadE-2 | XBJ1_0310 | XBJ1_3330 | Putative non-ribosomal peptide synthetase. | Acyl coenzyme A dehydrogenase. | 0.540 |
XBJ1_0310 | maoC | XBJ1_0310 | XBJ1_0128 | Putative non-ribosomal peptide synthetase. | Putative aldehyde dehydrogenase, phenylacetic acid degradation. | 0.631 |
XBJ1_0408 | XBJ1_0310 | XBJ1_0408 | XBJ1_0310 | Putative o-succinylbenzoate--CoA ligase. | Putative non-ribosomal peptide synthetase. | 0.717 |
XBJ1_0408 | XBJ1_3489 | XBJ1_0408 | XBJ1_3489 | Putative o-succinylbenzoate--CoA ligase. | Putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (LACS). | 0.936 |
XBJ1_0408 | XBJ1_3503 | XBJ1_0408 | XBJ1_3503 | Putative o-succinylbenzoate--CoA ligase. | Hypothetical protein. | 0.800 |
XBJ1_0408 | fadD | XBJ1_0408 | XBJ1_2242 | Putative o-succinylbenzoate--CoA ligase. | acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase). | 0.927 |
XBJ1_2699 | XBJ1_0310 | XBJ1_2699 | XBJ1_0310 | Acyl-CoA dehydrogenase. | Putative non-ribosomal peptide synthetase. | 0.540 |
XBJ1_2699 | XBJ1_3489 | XBJ1_2699 | XBJ1_3489 | Acyl-CoA dehydrogenase. | Putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (LACS). | 0.704 |
XBJ1_2699 | fadD | XBJ1_2699 | XBJ1_2242 | Acyl-CoA dehydrogenase. | acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase). | 0.561 |
XBJ1_2699 | maoC | XBJ1_2699 | XBJ1_0128 | Acyl-CoA dehydrogenase. | Putative aldehyde dehydrogenase, phenylacetic acid degradation. | 0.777 |
XBJ1_3489 | XBJ1_0310 | XBJ1_3489 | XBJ1_0310 | Putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (LACS). | Putative non-ribosomal peptide synthetase. | 0.556 |
XBJ1_3489 | XBJ1_0408 | XBJ1_3489 | XBJ1_0408 | Putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (LACS). | Putative o-succinylbenzoate--CoA ligase. | 0.936 |
XBJ1_3489 | XBJ1_2699 | XBJ1_3489 | XBJ1_2699 | Putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (LACS). | Acyl-CoA dehydrogenase. | 0.704 |
XBJ1_3489 | XBJ1_3503 | XBJ1_3489 | XBJ1_3503 | Putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (LACS). | Hypothetical protein. | 0.800 |
XBJ1_3489 | fadD | XBJ1_3489 | XBJ1_2242 | Putative long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (LACS). | acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase). | 0.909 |
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