STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XBJ1_3647Conserved hypothetical protein. (378 aa)    
Predicted Functional Partners:
XBJ1_2876
Putative ferric enterobactin transport protein (ABC superfamily, atp_bind).
 
 
 0.913
XBJ1_2877
Putative FecCD-family membrane transport protein (Inner membrane permease of iron/siderophore ABC transporter); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.901
btuC-2
Vitamin B12 transport protein (ABC superfamily, membrane); Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Involved in the translocation of the substrate across the membrane.
 
 
 
 0.749
btuC
Vitamin B12 transport protein (ABC superfamily, membrane); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.703
fepD-2
Ferric enterobactin transport protein (ABC superfamily, membrane); Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.671
fepD
Ferric enterobactin transport protein (ABC superfamily, membrane); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.664
fepC
Ferric enterobactin transport protein (ABC superfamily, atp_bind).
  
 
 0.650
fepC-2
Ferric enterobactin transport protein (ABC superfamily, atp_bind); Function of strongly homologous gene; transporter.
  
 
 0.650
XBJ1_3646
Hypothetical protein.
       0.535
entB-2
2,3-dihydro-2,3-dihydroxybenzoate synthetase (isochorismatase) (N-terminal); aryl carrier protein (C-terminal) (enterobactin synthase multienzyme complex component).
 
    0.530
Your Current Organism:
Xenorhabdus bovienii
NCBI taxonomy Id: 406818
Other names: X. bovienii SS-2004, Xenorhabdus bovienii SS-2004, Xenorhabdus bovienii str. SS-2004, Xenorhabdus bovienii strain SS-2004
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