STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK16634.1COG1629 Outer membrane receptor proteins, mostly Fe transport. (680 aa)    
Predicted Functional Partners:
AMK17788.1
Hypothetical protein.
  
     0.665
AMK18352.1
Hypothetical protein.
  
     0.654
AMK18548.1
Hypothetical protein.
  
     0.652
AMK19205.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
   0.652
AMK16402.1
COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
  
    0.649
AMK17772.1
COG5126 Ca2+-binding protein (EF-Hand superfamily).
  
     0.610
AMK16631.1
Aldehyde oxidoreductase 2Fe-2S subunit; COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.
       0.570
AMK16632.1
Xanthine dehydrogenase; COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs.
       0.570
AMK16633.1
Xanthine dehydrogenase; COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
       0.570
AMK16412.1
TonB-dependent receptor-like protein; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
    0.555
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.