STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK16658.1Putative ribonuclease BN; COG1295 Predicted membrane protein. (323 aa)    
Predicted Functional Partners:
AMK16659.1
enoyl-ACP reductase; COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH).
 
     0.880
AMK16657.1
COG2214 DnaJ-class molecular chaperone.
       0.812
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
       0.807
AMK16660.1
Hypothetical protein.
       0.678
AMK16661.1
Hypothetical protein.
       0.678
pdxH
Pyridoxine/pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.577
AMK16515.1
Polysaccharide biosynthesis protein.
 
     0.564
AMK16434.1
COG3218 ABC-type uncharacterized transport system, auxiliary component.
  
     0.482
AMK16568.1
COG1530 Ribonucleases G and E.
 
    0.467
AMK17482.1
Hypothetical protein.
  
     0.466
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.