STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK16945.1Polyhydroxyalkanoate synthase; COG3243 Poly(3-hydroxyalkanoate) synthetase. (580 aa)    
Predicted Functional Partners:
AMK17589.1
COG4553 Poly-beta-hydroxyalkanoate depolymerase.
 
  
 0.974
AMK17927.1
Polyhydroxyalkanoate synthase; COG3243 Poly(3-hydroxyalkanoate) synthetase.
  
  
  0.969
AMK17153.1
acetoacetyl-CoA reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 
  0.966
AMK18054.1
Poly-beta-hydroxyalkanoate synthase; COG3243 Poly(3-hydroxyalkanoate) synthetase.
  
  
 
0.916
AMK18359.1
3-hydroxybutyryl-CoA epimerase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
     
 0.914
AMK19592.1
Fatty acid oxidation complex alpha subunit; COG1024 Enoyl-CoA hydratase/carnithine racemase.
     
 0.914
AMK17926.1
Polyhydroxyalkonate synthesis repressor PhaR; COG5394 Uncharacterized protein conserved in bacteria.
 
   
 0.778
AMK16946.1
Phasin family protein.
 
  
 0.754
AMK18055.1
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; COG2030 Acyl dehydratase.
  
 0.690
AMK16944.1
Aminotransferase; COG0436 Aspartate/tyrosine/aromatic aminotransferase.
       0.606
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
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