STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK17127.1Transcription factor jumonji jmjC domain-containing protein. (286 aa)    
Predicted Functional Partners:
AMK17128.1
CelD-like protein.
 
     0.966
AMK17667.1
CelD-like protein.
 
     0.745
AMK16665.1
Hypothetical protein.
  
     0.685
AMK19537.1
COG2020 Putative protein-S-isoprenylcysteine methyltransferase.
  
     0.670
AMK19117.1
Hypothetical protein.
  
     0.661
AMK18825.1
Flp pilus assembly protein CpaD.
  
     0.638
AMK19066.1
Hypothetical protein.
  
     0.638
AMK17770.1
Flp pilus assembly protein TadG.
  
     0.619
AMK18639.1
Hypothetical protein.
  
     0.605
AMK18640.1
Hypothetical protein.
 
     0.592
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.