STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK17228.1COG0457 FOG: TPR repeat. (195 aa)    
Predicted Functional Partners:
AMK17227.1
COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
    0.863
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
       0.844
AMK16515.1
Polysaccharide biosynthesis protein.
 
     0.775
AMK16568.1
COG1530 Ribonucleases G and E.
  
     0.774
AMK17482.1
Hypothetical protein.
  
     0.774
AMK18815.1
Hypothetical protein.
  
     0.774
AMK19125.1
Hypothetical protein.
  
     0.773
AMK16992.1
Hypothetical protein.
  
     0.770
AMK17772.1
COG5126 Ca2+-binding protein (EF-Hand superfamily).
  
     0.769
AMK18775.1
COG0236 Acyl carrier protein.
 
     0.766
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.