STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK17560.1Hypothetical protein; COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (461 aa)    
Predicted Functional Partners:
AMK17559.1
COG1522 Transcriptional regulators.
 
   
 0.823
bioD
Dithiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
 0.805
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
  
 0.787
AMK17572.1
FAD dependent oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
 0.737
AMK17558.1
Hippurate hydrolase; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.
       0.727
AMK17563.1
GCN5-like N-acetyltransferase; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
     0.699
AMK17573.1
Haloacid dehalogenase; COG1011 Predicted hydrolase (HAD superfamily).
  
     0.680
AMK17574.1
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases.
 
   
 0.597
AMK17561.1
Tartrate dehydrogenase; COG0473 Isocitrate/isopropylmalate dehydrogenase.
 
   
 0.591
AMK17571.1
Extracellular solute-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
  
     0.586
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
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