STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK17636.1Putative transposase. (397 aa)    
Predicted Functional Partners:
AMK19460.1
COG0067 Glutamate synthase domain 1.
  
  
 0.491
AMK18938.1
Transposase TnpC protein; COG3436 Transposase and inactivated derivatives.
  
     0.453
AMK19564.1
Transposase TnpC protein; COG3436 Transposase and inactivated derivatives.
  
     0.453
AMK16830.1
Transposase IS4 family protein; COG3666 Transposase and inactivated derivatives.
  
     0.407
AMK17627.1
PAS/PAC sensor hybrid histidine kinase; COG2202 FOG: PAS/PAC domain.
   
 
 0.407
AMK18852.1
Signal transduction histidine kinase; COG2202 FOG: PAS/PAC domain.
   
 
 0.407
argG
COG0137 Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.403
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.