STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK17974.1COG4235 Cytochrome c biogenesis factor. (214 aa)    
Predicted Functional Partners:
AMK17977.1
COG1138 Cytochrome c biogenesis factor.
  
 
 0.959
AMK17976.1
Redoxin domain-containing protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
  
 0.940
AMK17975.1
Cytochrome c-type biogenesis protein CcmH; Possible subunit of a heme lyase.
  
  
 0.930
ccmE
Cytochrome c-type biogenesis protein ccmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
  
  
 0.820
AMK17163.1
Hypothetical protein.
  
     0.764
AMK17727.1
Sporulation domain-containing protein.
 
 
   0.761
AMK17482.1
Hypothetical protein.
  
     0.758
AMK19125.1
Hypothetical protein.
  
     0.749
AMK17763.1
Hypothetical protein.
  
     0.740
AMK16515.1
Polysaccharide biosynthesis protein.
 
     0.735
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.