STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK18406.1Hypothetical protein. (226 aa)    
Predicted Functional Partners:
AMK18404.1
ErfK/YbiS/YcfS/YnhG family protein; COG2989 Uncharacterized protein conserved in bacteria.
 
   
 0.826
AMK17784.1
COG2989 Uncharacterized protein conserved in bacteria.
 
   
 0.634
AMK18405.1
Hypothetical protein.
       0.541
AMK17552.1
Hypothetical protein.
  
    0.473
AMK18403.1
COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
       0.453
AMK20165.1
Xylose ABC transporter.
  
     0.436
AMK16938.1
Hypothetical protein.
  
 
   0.417
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.