Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMK16773.1 | AMK18716.1 | K663_01910 | K663_11685 | Restriction enzyme. | MT-A70; COG4725 Transcriptional activator, adenine-specific DNA methyltransferase; Belongs to the MT-A70-like family. | 0.740 |
AMK16773.1 | rpoA | K663_01910 | K663_15350 | Restriction enzyme. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.930 |
AMK16773.1 | rpoB | K663_01910 | K663_03980 | Restriction enzyme. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.933 |
AMK16773.1 | rpoZ | K663_01910 | K663_03665 | Restriction enzyme. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.929 |
AMK16786.1 | AMK18716.1 | K663_01975 | K663_11685 | helicase/SNF2 domain-containing protein; COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | MT-A70; COG4725 Transcriptional activator, adenine-specific DNA methyltransferase; Belongs to the MT-A70-like family. | 0.740 |
AMK16786.1 | rpoA | K663_01975 | K663_15350 | helicase/SNF2 domain-containing protein; COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.930 |
AMK16786.1 | rpoB | K663_01975 | K663_03980 | helicase/SNF2 domain-containing protein; COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.933 |
AMK16786.1 | rpoZ | K663_01975 | K663_03665 | helicase/SNF2 domain-containing protein; COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.929 |
AMK18715.1 | AMK18716.1 | K663_11680 | K663_11685 | Hypothetical protein. | MT-A70; COG4725 Transcriptional activator, adenine-specific DNA methyltransferase; Belongs to the MT-A70-like family. | 0.773 |
AMK18715.1 | AMK18717.1 | K663_11680 | K663_11690 | Hypothetical protein. | Hypothetical protein. | 0.773 |
AMK18715.1 | AMK18718.1 | K663_11680 | K663_11695 | Hypothetical protein. | Hypothetical protein. | 0.773 |
AMK18715.1 | AMK18719.1 | K663_11680 | K663_11700 | Hypothetical protein. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.773 |
AMK18715.1 | dnaG-2 | K663_11680 | K663_11675 | Hypothetical protein. | P4 family phage/plasmid primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.581 |
AMK18716.1 | AMK16773.1 | K663_11685 | K663_01910 | MT-A70; COG4725 Transcriptional activator, adenine-specific DNA methyltransferase; Belongs to the MT-A70-like family. | Restriction enzyme. | 0.740 |
AMK18716.1 | AMK16786.1 | K663_11685 | K663_01975 | MT-A70; COG4725 Transcriptional activator, adenine-specific DNA methyltransferase; Belongs to the MT-A70-like family. | helicase/SNF2 domain-containing protein; COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | 0.740 |
AMK18716.1 | AMK18715.1 | K663_11685 | K663_11680 | MT-A70; COG4725 Transcriptional activator, adenine-specific DNA methyltransferase; Belongs to the MT-A70-like family. | Hypothetical protein. | 0.773 |
AMK18716.1 | AMK18717.1 | K663_11685 | K663_11690 | MT-A70; COG4725 Transcriptional activator, adenine-specific DNA methyltransferase; Belongs to the MT-A70-like family. | Hypothetical protein. | 0.773 |
AMK18716.1 | AMK18718.1 | K663_11685 | K663_11695 | MT-A70; COG4725 Transcriptional activator, adenine-specific DNA methyltransferase; Belongs to the MT-A70-like family. | Hypothetical protein. | 0.773 |
AMK18716.1 | AMK18719.1 | K663_11685 | K663_11700 | MT-A70; COG4725 Transcriptional activator, adenine-specific DNA methyltransferase; Belongs to the MT-A70-like family. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.773 |
AMK18716.1 | dnaG-2 | K663_11685 | K663_11675 | MT-A70; COG4725 Transcriptional activator, adenine-specific DNA methyltransferase; Belongs to the MT-A70-like family. | P4 family phage/plasmid primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.592 |
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