STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK18934.1Hypothetical protein. (357 aa)    
Predicted Functional Partners:
AMK18931.1
Putative glycosyl transferase, family 2; COG3551 Uncharacterized protein conserved in bacteria.
  
  
 0.803
AMK18932.1
Hypothetical protein.
       0.773
AMK18933.1
Hypothetical protein.
       0.773
glgB
Glycogen branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.605
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase; COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; Belongs to the KdsA family.
     
 0.596
AMK18935.1
Transposase IS3/IS911 family protein; COG2801 Transposase and inactivated derivatives.
  
    0.470
AMK17541.1
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.457
AMK17680.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.457
AMK18936.1
COG2801 Transposase and inactivated derivatives.
       0.451
AMK18963.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.439
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
Server load: high (86%) [ZH]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.