STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK19192.1Putative aminoglycoside phosphotransferase; COG0515 Serine/threonine protein kinase. (271 aa)    
Predicted Functional Partners:
AMK17859.1
Putative ceramide glucosyltransferase; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
 
     0.617
AMK18228.1
COG0464 ATPases of the AAA+ class.
  
     0.584
AMK18341.1
COG4713 Predicted membrane protein.
  
     0.575
AMK16960.1
Hypothetical protein.
  
     0.568
AMK18240.1
COG2273 Beta-glucanase/Beta-glucan synthetase.
  
     0.563
AMK19191.1
COG0561 Predicted hydrolases of the HAD superfamily.
       0.548
AMK18233.1
Exopolysaccharide production protein; COG3307 Lipid A core - O-antigen ligase and related enzymes.
  
     0.542
AMK20165.1
Xylose ABC transporter.
  
     0.541
AMK19028.1
Flagellin domain-containing protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
     0.505
AMK19190.1
Putative nitrate reductase; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing.
       0.504
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
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