STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK19272.1COG0438 Glycosyltransferase. (395 aa)    
Predicted Functional Partners:
AMK19273.1
COG0438 Glycosyltransferase.
 
     0.942
AMK19270.1
COG0438 Glycosyltransferase.
 
     0.844
AMK19262.1
COG0438 Glycosyltransferase.
 
     0.787
AMK19274.1
Putative pectate lyase.
       0.773
AMK17541.1
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
 
  
 0.707
AMK19271.1
Hypothetical protein.
       0.697
AMK19263.1
Protein RfbP; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
 
  
 0.652
AMK17680.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
 
  
 0.623
glgB
Glycogen branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.605
AMK19268.1
Polysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.509
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.