STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK19558.1Conjugal transfer protein TrbB; COG4962 Flp pilus assembly protein, ATPase CpaF. (328 aa)    
Predicted Functional Partners:
AMK19555.1
Conjugal transfer ATPase TrbE; COG3451 Type IV secretory pathway, VirB4 components.
 
   
 0.913
AMK19557.1
Conjugal transfer protein TrbC; COG3838 Type IV secretory pathway, VirB2 components (pilins).
 
   
 0.882
AMK19556.1
Conjugal transfer protein TrbD; COG5268 Type IV secretory pathway, TrbD component.
 
   
 0.866
AMK19560.1
Conjugal transfer coupling protein TraG; COG3505 Type IV secretory pathway, VirD4 components.
   
 0.864
AMK20058.1
Type II secretion system F domain-containing protein; COG4965 Flp pilus assembly protein TadB.
 
  
 0.848
AMK19554.1
COG5314 Conjugal transfer/entry exclusion protein.
 
   
 0.846
AMK18452.1
COG2064 Flp pilus assembly protein TadC.
 
  
 0.841
AMK18827.1
Type II secretion system F domain-containing protein; COG4965 Flp pilus assembly protein TadB.
 
  
 0.831
AMK19559.1
Helix-turn-helix protein, CopG.
 
     0.827
AMK18451.1
Type II secretion system F domain-containing protein; COG2064 Flp pilus assembly protein TadC.
 
  
 0.813
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.