STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK19613.1Hypothetical protein. (595 aa)    
Predicted Functional Partners:
AMK19612.1
Integrase domain-containing protein; COG4973 Site-specific recombinase XerC.
 
     0.946
AMK19614.1
Phage integrase family protein.
 
     0.946
AMK18890.1
Phage integrase family protein.
  
     0.774
AMK18892.1
Integrase domain-containing protein; COG4973 Site-specific recombinase XerC; Belongs to the 'phage' integrase family.
  
     0.774
AMK19615.1
N-terminus replication primase; COG4227 Antirestriction protein.
 
     0.712
AMK18042.1
DNA transfer and F pilus assembly protein TraG.
  
     0.669
AMK18194.1
PRTRC system protein B.
  
     0.588
AMK18275.1
Nuclease; COG1475 Predicted transcriptional regulators.
  
     0.516
AMK18902.1
COG1396 Predicted transcriptional regulators.
  
     0.503
AMK18147.1
Hypothetical protein.
  
     0.489
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
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