STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK19703.1Hypothetical protein. (296 aa)    
Predicted Functional Partners:
AMK19702.1
Cytochrome C family protein; COG1716 FOG: FHA domain.
 
     0.966
AMK19704.1
Cyclic nucleotide-binding protein; COG0492 Thioredoxin reductase.
 
     0.959
cpdA
Metallophosphoesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.
 
     0.882
AMK19705.1
Hypothetical protein; COG4235 Cytochrome c biogenesis factor.
 
     0.836
AMK19695.1
Hypothetical protein.
 
     0.800
AMK19696.1
Hypothetical protein.
 
     0.800
AMK19697.1
Hypothetical protein.
 
     0.800
AMK19698.1
LVIVD repeat protein precursor; COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
 
     0.791
AMK19690.1
COG4995 Uncharacterized protein conserved in bacteria.
  
     0.765
AMK19693.1
Polypeptide-transport-associated domain-containing protein ShlB-type; COG2831 Hemolysin activation/secretion protein.
  
     0.748
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
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