STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK19952.16-oxocamphor hydrolase; COG1024 Enoyl-CoA hydratase/carnithine racemase. (259 aa)    
Predicted Functional Partners:
AMK19950.1
Flavin-containing monooxygenase-like protein; COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
   
   0.803
AMK19507.1
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 
 0.796
AMK19951.1
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 0.795
AMK17068.1
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.776
AMK19844.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
     0.773
AMK19899.1
Crotonase; COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
     0.769
AMK19831.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
     0.767
AMK17532.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
     0.732
AMK17627.1
PAS/PAC sensor hybrid histidine kinase; COG2202 FOG: PAS/PAC domain.
   
 
 0.722
AMK18852.1
Signal transduction histidine kinase; COG2202 FOG: PAS/PAC domain.
   
 
 0.722
Your Current Organism:
Sphingobium sp. MI1205
NCBI taxonomy Id: 407020
Other names: S. sp. MI1205
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