STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK47033.1Sialate O-acetylesterase. (496 aa)    
Predicted Functional Partners:
SEK47074.1
Ricin-type beta-trefoil lectin domain-like.
       0.596
SEM49574.1
Parallel beta-helix repeat (two copies).
   
 0.592
SEM32330.1
Sialidase-1.
  
  0.576
SEK46976.1
Alpha-1,2-mannosidase, putative.
      0.574
SEK38060.1
Sialidase-1.
  
  0.568
SEK46793.1
Starch-binding associating with outer membrane.
   
  0.562
SEK74653.1
Mannan endo-1,4-beta-mannosidase; Belongs to the glycosyl hydrolase 26 family.
 
  
 0.555
SEK46896.1
Lysophospholipase L1.
 
     0.551
SEK71929.1
Sialidase-1.
 
  
  0.524
SEL56456.1
Protein of unknown function.
   
 0.522
Your Current Organism:
Pseudosphingobacterium domesticum
NCBI taxonomy Id: 407022
Other names: CCUG 54353, DSM 18733, LMG 23837, LMG:23837, Olivibacter domesticus, P. domesticum, Pseudosphingobacterium domesticum Vaz-Moreira et al. 2007 emend. Hahnke et al. 2016, strain DC-186
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.